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Sample registration and metadata submission through NMDC EDGE
The development of NMDC EDGE in the Renewal will focus on using the NMDC runtime orchestration
services to provide integration with NMDC f…
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Use the examples data file framework
As in, could a `Biosample` have a `neon_study_identifiers` annotation?
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_Some of these are confusions about what should be expressed in the nmdc-schema and what should be handled in the submission portal_
- [ ] `Biosample.slot_usage.heavy_metals_meth.multivalued`: imp…
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### Description
Perform a join query between “individual” and “biosample” or any other two or more entity
### Proposed solution
New API endpoint to support queries involving multiple entities.
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Hi Ming,
I would need a way to indicate clinical isolates and ideally also link to the NCBI BioSample database:
Taxaname_file;NCBI_BioSample
Pseudomonas aeruginosa isolate CH2682;https://www.ncbi…
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IN the short term (June 2022) we want searchable biosamples that are common to potentially 3 sequencing project, 3 NOM instrument runs and ~25 metaP
Process discussed involves creating new nmdc: bi…
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this depends on what's available in the XML file. any of EBI, INSDC, SRA sample ids would be useful for allowing to link to other data.
along those lines, sometimes samples have children and parent…
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This misbehavior happens with fasterq-dump 3.0.7 on the following accession and a few others, at a rate of about 7% of biosample-based accessions. **SAMN08049698** and some other biosample-based acces…
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There are many BioSamples that have not been added to the database. Examples will be added as comments in this issue thread.
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_This task is a submission stream task._
DoD:
- [x] ENA does not send XML documents to validation using XML checklists
- [ ] all related code is remove - e.g. checklist xml model classes
- [ ] all r…