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I want to upload my own column to cbioportal docker image. So, referring to the link[https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#mutation-data], I wrote the input files acco…
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Custom data can be added on the study view through the menu `Charts` -> `Custom Data`. There are a few limitations of the current implementation:
- Only categorical data is supported (it was original…
jjgao updated
6 months ago
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cBioPortal used to support mouse genes:
https://github.com/cBioPortal/cbioportal/pull/6312
All our annotations are for human
inodb updated
5 years ago
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Following up on an email I sent to the mailing list about mappings to other resources like NCIT, UMLS and DOID, I noticed that the mappings file at https://github.com/cBioPortal/oncotree/blob/master/s…
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Update swagger.config to include GENE_PANEL_DATA in public APIs
Replace _ with - in all generic assay API endpoints and its usages
Related to cBioPortal/cbioportal#9433
Additional end points where …
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It seems that geneticEntityId is listed as required:
```
from bravado.client import SwaggerClient
cbioportal = SwaggerClient.from_url('https://www.cbioportal.org/api/api-docs')
for a in dir(cbioporta…
inodb updated
6 months ago
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Code in PdbScriptsPipelineRunCommand.java may attempt to access files through a URLConnection object from the standard java library. If the url specifies the "ftp:" protocol, and if the program is run…
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https://docs.cbioportal.org/deployment/docker/using-keycloak/
Instructions here mention a no longer available version of keycloak's docker. (as far as i could find).
jboss/keycloak:4.8.3.Final
…
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Hi Team,
Is it possible to define our own gene list instead of entering every time in "Enter Genes:
" dropdown?
**Proposed solution:**
- **Save user defined list into user profile**
- Cl…
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**Background**:
The [cBioPortal for Cancer Genomics](https://aacrjournals.org/cancerdiscovery/article/2/5/401/3246/The-cBio-Cancer-Genomics-Portal-An-Open-Platform) is a publicly available resourc…