genome-nexus genome-nexus-importer issues

genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

MIT License

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issues

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Revert "Mutation assessor v4"

#94 leexgh closed 3 months ago
0
Update github action to run on prs and install unxz command

#93 leexgh opened 3 months ago
0
Mutation assessor v4

#92 leexgh closed 3 months ago
0
switch to plain mongo image

#91 nr23730 opened 3 months ago
2
Update Dockerfile

#90 JunheZoooo opened 5 months ago
0
Update HGNC with prev_symbols

#89 leexgh closed 10 months ago
0
Update Version files

#88 leexgh closed 11 months ago
0
Use circle ci to publish docker images

#87 leexgh closed 11 months ago
0
Test circle ci push docker image

#86 leexgh closed 11 months ago
0
Update HGNC symbol 2023.10

#85 leexgh closed 11 months ago
1
Update version information

#84 leexgh closed 11 months ago
1
Update ClinVar to version 20230722

#83 leexgh closed 1 year ago
0
Update index_db_migration.js

#82 leexgh closed 1 year ago
0
Fix env vars in README

#81 jeffquinn-msk closed 1 year ago
0
Hgnc symbol update 202305

#80 leexgh closed 1 year ago
0
Pfam domain type should be integer

#79 leexgh opened 1 year ago
0
Fix missing pfam in grch38

#78 leexgh closed 1 year ago
0
Bump requests from 2.21.0 to 2.31.0 in /scripts

#77 dependabot[bot] opened 1 year ago
0
Fix critical security vulnerabilties in v0.27

#76 pvannierop opened 1 year ago
0
Update canonical transcript overrides with explanation

#75 leexgh closed 1 year ago
0
Add new Oncokb isoform overrides files

#74 leexgh closed 1 year ago
0
Separate oncokb overrides file to grch37 and grch38

#73 leexgh closed 1 year ago
0
import gnomad data

#72 jjgao opened 1 year ago
0
Add more info to version API

#71 leexgh closed 1 year ago
0
Update hgnc symbols

#70 leexgh closed 1 year ago
0
Update canonical transcripts and hotspots for other versions

#69 leexgh opened 2 years ago
0
Fix Missing value IMAGE_TAG grcm image error

#68 leexgh closed 2 years ago
0
fix docker tag for mutationassessor image

#67 nr23730 closed 2 years ago
0
fix github action for grcm38

#66 nr23730 closed 2 years ago
1
Fix build grcm image docker workflow

#65 leexgh closed 2 years ago
0
Update grch38 ensembl95 hotspots

#64 leexgh closed 2 years ago
3
add image workflow for grcm38

#63 nr23730 closed 2 years ago
0
Update grch38 ensembl95 canonical transcript

#62 leexgh closed 2 years ago
4
Fix issues in "make_one_canonical_transcript_per_gene.py" script

#61 pieterlukasse opened 2 years ago
1
Make a file with unique protein sequences and associated IDs

#60 inodb opened 2 years ago
0
Update Hotspots to grch38

#59 pieterlukasse closed 2 years ago
1
Hotspots data not grch38 compatible

#58 pieterlukasse closed 2 years ago
10
Rename docker image name

#57 ruslan-forostianov opened 2 years ago
0
Build grch38 db when publish

#56 leexgh closed 2 years ago
0
Add git action to publish grch38 image

#55 leexgh closed 2 years ago
1
Update transcript mapping

#54 leexgh closed 2 years ago
2
add mutation assessor data to mongo

#53 nr23730 closed 2 years ago
8
db migration script for search endpoint

#52 leexgh closed 2 years ago
0
Update hgnc set file

#51 leexgh closed 3 years ago
0
use gene_info from cbioportal for canonical transcripts

#50 inodb closed 2 years ago
0
Update transcript to uniprot mapping

#49 leexgh closed 3 years ago
0
fix clinvar delins

#48 leexgh closed 3 years ago
0
clean up clinvar data with -1 location

#47 leexgh closed 3 years ago
0
Env var REF_ENSEMBL_VERSION is ignored when mongo data is initialized (Dockerfile)

#46 zimnyx opened 3 years ago
0
Update signal to include germline biallelic data

#45 leexgh closed 3 years ago
0