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@adkinsrs @jkanche I am using P2, mouse, scATAC-seq, Chromatin Accessibility (Waldhaus) as an example but it was the same with the 2 Segil datasets.
I enter atoh1 pou4f3 sox2 in the search box of t…
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__Terms:__
I've annotated each link using the following terms below. I've provided explanations for what I mean by each term.
[Formatting Issues] Usually an issue with bullet or numbered lists
[M…
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For now the pipeline uses the gencode bedfile to measure chromatin accessibility around the gene body.
We want to include other bedfiles, such as protein binding sites or repeat.
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SInce the " chromatin silencing " terms are going, probably this grouping term should also be removed.
GO:0005677 | chromatin silencing complex
related to
https://github.com/geneontology/go-a…
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sub-task of #2
- [ ] 5a. human DLPFC ATAC-seq CP vs. VZ (Geschwind Cell 2018; ATAC-seq)
- [ ] 5b. ROADMAP fetal brain chromatin states
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Plot that would show if the detected chromatin accessibility values are higher than expected.
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Dear all,
Thanks for developing such a comprehensive database for 3D chromatin looping! I have a question. I want to check the human cerebellum 3D looping data. How can I get all the human sample s…
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Hi, thank you very much for developing such a helpful tool! I am interested in mapping multimodal data such as SHARE-seq to reveal spatial patterns of chromatin accessibility, but I don't know how to …
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By genomic features I mean: transcript exons, whole region, transcription start sites etc.
This would be useful for looking at chromatin availability at a TSS, as is commonly done with ATAC-seq ana…
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goal is to check if proportion of peaks in each ChromHMM chromatin state shifts with cell cycle phase & DMSO treatment.