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**Is your feature request related to a problem? Please describe.**
As `poly` grows, more and more types will be shared between nominally unrelated packages.
For example, many packages will deal w…
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Hello!
I am new to TopoStats, and am using it as an alternative to an outdated method, which relied on an abundance of manual input.
The goal of the research project is incubating certain prot…
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Hi:
I am using Circle-Map to detect ecDNA from circle-seq data(paired-end).
However, strangely, the output bedfiles show that ecDNAs only exist in Chr10 and Chr11, and another sample only in Chr10,…
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H Xiaotao, great tool filling an urgent unmet need.
I am running neoloopfinder on the following SVs:
```
chr1 chr1 ++ 198179654 205207358 translocation
chr1 chr1 …
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# ePlant3 Interactions View Blueprint and Requirements
by V. Lau (reviewed by N. Provart)
## Introduction
Genes and their gene products (proteins) can interact with other genes and gene produ…
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![image](https://user-images.githubusercontent.com/17573404/74113401-77b19f00-4b69-11ea-8441-987488f39a86.png)
This is a very useful library, thank you for developing it! I am interested in using D…
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Here is the run I am trying to replicate. Below, are the inputs: the two sample sequences, and using DNA parameters.
![image](https://github.com/ViennaRNA/ViennaRNA/assets/124276755/d49417a6-734c-4…
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@ahwagner raised in the VRS/VCF meeting the idea of reverse complementing sequences and making them available in refget. The idea being if you are going to refer to an event on the opposing strand, su…
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Hi, I've characterized and later simulated 20000 reads from the E. Coli genome.
It seems that the simulated_aligned_reads.fastq file generated in the simulation phase isn't a valid fastq file, accord…
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When using `bamutils count` to generate FPKM's Some of the genes have an FPKM of zero. This is despite there being many uniquely mapped reads at that location. The command I've used is:
```
bamutils …