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Otherwise the generated tool descriptions are incompatible with all non-Rabix Bunny CWL executors
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I run toil with lustre and Univa Grid Engine.
Sometimes succeded and sometimes fails.
When I rerun, sometimes succeded and sometimes fails.
I faced same things on lustre and slurm.
I set `…
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It seems like we need to address a bunch of topics in the shell to cwl text that isn't explained to do the exercises
1) output is first explained using stdout which I think is super confusing as a fi…
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Hi all,
I'm working on the use case described in https://github.com/ResearchObject/ro-crate/issues/20
Basically I want to wrap a reference workflow obtained from a Galaxy instance so the main file…
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Hi
Can you add an example of how to execute cwl-tes when the Task Execution server (funnel, TESK) is running remotely and not locally?
I tried to execute the CWL test workflow via cwl-tes in a …
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When OGC API - Processes - Part 2 is published, we will need to register the CWL media type in the [OGC Definitions Server](http://www.opengis.net/def/media-type/).
Progress towards the registratio…
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Consider the following workflow:
```
cwlVersion: v1.2
class: Workflow
inputs:
input: int?
outputs: []
steps:
step:
in:
input:
source: input
valueFrom:…
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Related to #195, #187, #186, #175, #170, #153, #141, #21
## Motivation
There are several inflexible things in the current system:
1. Right now, refgenie recipes are hard-coded. It would be ni…
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requests to fix any of the below should go against https://github.com/common-workflow-language/cwl-v1.2/tree/1.2.1_proposed You can [preview all the implemented changes for v1.2.1 so far](https://git…
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I converted a working draft-3 CWL file to a version 1.0 CWL file by changing the following.
1. `"cwlVersion": "draft-3",` -> `"cwlVersion": "v1.0",`
2. `"inputs"` -> `"in"` for all STEP inputs (but…