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Hi,
I wanted to test StellarPGx with cram files. However, I do not get a result and I do not see any error. The only output I see is this
```
N E X T F L O W ~ version 22.10.0
Launching `main.…
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I am using PyPGx v0.24.0 to run run-ngs-pipeline on a set of 18 samples. I start with fastq files and use PyPGx internal BAM and VCF calling. Everything runs, but I've noticed that all samples are cal…
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what I can try is those notebook. but how can I actually run it?
how do you run docking_baselines/scripts/generate_molecules.py?
I looked at parameter, it is not clear what to put there.
Could …
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For example [CYP2C9*1](https://www.pharmgkb.org/clinicalAnnotation/1451092541).
Look into the data and discuss how we should represent these.
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Running [this workflow](https://github.com/Yuri05/TestReport/releases/download/vTralala/Crash_DDGI.7z):
```
i Info Starting run of Plot Comparison Time Profiles task
05/09/2024 - 16:53:57
! Warn…
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### Summary
The Hub has grown fast in the last months, and as such we need to make sure the models are reproducible and give the expected results, as some small bugs might have happened inadvertent…
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Hello,
I'm writing to you because I'm having a few problems with Aldy. First, I ran it through all the possible genes. I've had difficulties with the CYP2A6 and CYP2D6 genes, but I'm going to focus…
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Hi,
When I run **detect_cnv.pl -trio** using a custom pfb file for the Illumina GSA array I get the following error:
> ERROR: For nextregion 22,kgp15099441,rs530422334, pos=rs5030865.1 rs78482768…
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I have a couple of suggestions from user's perspecitve. Please let me know if they are sensible or you have plans to look into them already.
1. The current implementation of the tool analyses all 2…
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Hello,
I constructed the graph pangenome according to the process (https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md (the quick start section)) you gave.
The first tw…