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Hello,
Minimap2 usually should be much faster than bwa with long reads. Can we replace bwa with minimap2?
Thanks,
Fuyou
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If you have input.fofn with files with extensions .fa, fasta2DB apparently tries to append .fasta to the names rather than using them as is.
Funny thing, though, I believe it wasn't the case for the …
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I ran FALCON to assemble a 700Mb genome using 60X raw pacbio reads. In order to avoid the duplicate error, I installed the latest DALIGNER in FALCON. However, my assembly always got stuck at the first…
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Hi,
After many falcon runs on at least 5+ species, I finally came across a new species which failed for the first time. I tried to restart falcon by just restarting with the same commands:
```
$ no…
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Hi,
I'm trying out FALCON with the E.coli test data but I seem to get a different output -i.e. different size assembly- when compared to the numbers you published on twitter a few days ago (4,631,625b…
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Hi all,
I've been trying to run HINGE using Circular Consensus Sequencing reads that are obtained after a Sequel run. As expected the number of reads decreases drastically due to CCS, but on the ot…
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The changes from 477d5b92459c7e22baf2e15af712b70ee54c838b introduced a serious bug into `LAsort` that causes a segfault. The code crashes in [`LAsort.c:377`](https://github.com/thegenemyers/DALIGNER/b…
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Hi,
Could Falcon produce a file linking input and output (corrected) read names?
Cheers,
Christophe
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Hi there,
I've been having trouble getting the test data set to run correctly, so I know something is wrong with the installation... At first, it appeared that I had an issue similar to https://gi…
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I am installing this pipeline on Stallo; a rocks distro cluster in Norway. I am struggling to understand how the number of parallel processes are defined. If I set the number of cores to 20 and the nu…