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cc @turbomam
If we need to represent Illumina NovaSeq 6000 S4, I assume we would create a subclass of
id: OBI:0400043
name: flow cell
def: "Aparatus in the fluidic subsystem where the sheath…
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I want to create a `variant_catalog.json` file to identify VNTR in FcRn gene using WGS sequencing data.
The FcRn gene contains a VNTR sequence consisting of three repeats of 37 nucleotides each, wit…
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Hi I'm trying to run import-rna with raw read counts. The results are very different from that by targeted DNA seq. The samples for RNA seq vs. DNA seq are 99% same so they are supposed to generate si…
laopp updated
4 years ago
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The IG should come up with definitions for environmental sample, environmental DNA (in comparison to single species samples), abiotic versus biotic environments etc.
**_Examples from Droege et al. …
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### Version
1
### DataCap Applicant
Encyclopedia of DNA Elements (ENCODE)
### Project ID
ENCODE01
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Reg…
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editor preferred term: Illumina HiSeq X Five
alternative terms: HiSeq X Five
textual definition- A DNA sequencer that consists of a set of 5 HiSeq X Sequencing Systems.
definition source for the …
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Templates have been used to create the following files:
- protocol_sampling_CTD.md
- protocol_DNA_extraction_Sterivex.md
- protocol_PCR_16S_V4V5.md
- protocol_PCR_16S_V9.md
- protocol_sequencin…
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Hi Vg team,
I have a problem,I'm wondering if Vg tools can be used for variants(snp;indel;SV) call basing on bulk RNA sequencing. You known that the small variants can be detected based on RN…
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We recently specified the definition of a detection technique as an assay (A) that is part of another assay (B), where the target entities of A and B are disjoint, and the target entity of A is a pro…
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Dear aroth85,
Thank you for developing pyclone-vi,
I would like to use the software to caculate CCF from targeted DNA sequencing data. I have performed SNV/INDEL calling and CNV to obtain minor…