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Hi there,
I ran your code on my own Hi-C data for 3 cell lines (Neural progenitors cell lines, Derived Neurons and Astrocyte glials) using the methodology you describe, but I find a average number…
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Hello, I download the TF ChIP from ENCODE and rename the narrowbed file as EZH2-ENCFF610BYU.bed. This file was putted into the folder named TFchip, while after I run the following command, the error c…
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Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
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Integration of lists with information about chromosomal segments (including several genes e.g., ”chr22: 19,037,148 - 21,228,744”) for use in Scout in the same manner as we use gene lists. This is esse…
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Selleri lab has reported these datasets as ready for Hub review.
robes updated
4 years ago
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Hello,
Super happy with the database that you have put together. This is an awesome resource for researchers.
So from some experiments in my lab I have a list of DMRs from DNA methylation data and…
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When I run mv.aggregate_peaks_10x with both the demo and my own data, I get this error: 'SparseCSCView' object has no attribute 'A'
How can I get around this?
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http://doi.org/10.1371/journal.pcbi.1005403
> Understanding the cell-specific binding patterns of transcription factors (TFs) is fundamental to studying gene regulatory networks in biological syste…
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Hello,
I have defined annotation features - promoter and enhancer lists. I used them with Hi-C data trying to find enhancer-promoter pairs. My Hi-C data ranges were 10kb in size. Later I repeated t…
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Hi, I have a couple of questions regarding ELMER v2. In the section find significant gene-probe pairs, the output file contains a distance column, which is supposed to be the distance from the probe t…