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Hi, I have a couple of questions regarding ELMER v2. In the section find significant gene-probe pairs, the output file contains a distance column, which is supposed to be the distance from the probe t…
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### [Transcription factors](https://www.youtube.com/watch?v=Sd3imcsvXxI)
1. Transcription factor (proteins) control the expression of genes by regulating the process of gene transcription.
![gene-…
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IMPC has paths to images for given genotype+phenotype associations. it would be very cool to display this data. it's available in a rest call like:
http://www.ebi.ac.uk/mi/impc/solr/images/select?…
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https://docs.google.com/spreadsheets/d/1X870i3NhO7xEhqhLXK4eravNd72x-O-xbrpmlT835nY/edit?usp=sharing
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http://doi.org/10.1371/journal.pcbi.1005403
> Understanding the cell-specific binding patterns of transcription factors (TFs) is fundamental to studying gene regulatory networks in biological syste…
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Can I use ananse to compare TFs networks between disease and normal condition such as aging and young ,or fibrosis disease and healthy control rather than differentiation?
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I use ananse influence to compare two networks successfully but failed when I add a white list of genes. My list goes as follow:
![image](https://github.com/vanheeringen-lab/ANANSE/assets/73478273/98…
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[Bower et al](https://doi.org/10.1101/2024.05.26.595809) describe a prototypical novel element that confers extreme-distance gene activation by remote enhancers.
name: range extender element
is_a:…
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https://bioentity.link//#/publication/10.1534/g3.119.400471
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# Data overlap
## Generate a `data overlap matrix`. Overlapping to the `ATAC-Seq differential accessible regions`
- [x] **ChIP-Seq:** `TRUE` or `FALSE` of there is an overlap between ATAC-Seq an…