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I want to see the percent AG content of a fasta file
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While running what is listed as "Step 2a" in the Running Braken guide, I get the following error:
> classify: malformed fasta file - expected header char > not found
0 sequences (0.00 Mbp) process…
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I am attempting to convert my fasta files to fastq using the command:
seq -F contig.2.fasta > contig.2.fq
but I keep getting:
seq: invalid option -- F
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Good day,
I am trying to run the nanomonsv insert_classify command as follows:
nanomonsv: error: unrecognized arguments: GRCh38_latest_genomic.fa
However I am getting the following error:
nano…
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Hi,
I have followed the installation steps on here and am trying to get this to work on RStudio but I get the following errors when I try and run the test.fasta.
test 1,
heuristics = FALSE,
…
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Hello dear developers,
I will try PECAT for the first time for a diploid genome of about 500Mb and I am writing to ask for script recommendations. There are some template cfgfile files for some spe…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hi,
I'm encountering an issue while attempting to run the command:
`spacepharer easy-predict spacers/*.fna targetSetDB predictions.tsv temp/`
I have approximately 35,000 FASTA files containin…
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I have uploaded a valid fasta file with the appropriate format.
Therefore, when I upload the fasta file, the VIRIDIC says "Valid fasta file"
But, VIRIDIC was not able to process my calculation.
I …
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Hi!
I'm trying to use your tool for comparing TAD boundaries between two species.
I keep running into the error "Did not find fasta records in input files" at the mash sketch step.
When I loo…