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Hi,
I find threads doesn't work under the following case and I must set -j > 30 to run this command:
![image](https://github.com/snakemake/snakemake/assets/29703450/dea04ba4-a5c9-4301-a573-8a1b74278…
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echo "No reads in /dell/muscle/sample9_2.fastq.gz" > samples/sample9/read_statistics/fastqc_stats/sample9_2_fastqc.html && echo "No reads in /dell/muscle/sample9_2.fastq.gz" > samples/sample9/read_sta…
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Hi, I recently ran fastp on an Illumina dataset with the following command:
fastp -i SRR18278237.fastq.gz -o SRR18278237.fastp.gz -z 9 -l 15 -w 16 --dedup --dup_calc_accuracy 6 -x -3 --cut_mean_quali…
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**Describe the bug**
Masthead covers up the top of all panels after drilling into FastQC report
* activity bar doesn't impact
* themes do not impact
* new in 23.1 pre-release
**Galaxy Version a…
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There seems to be an extra step calling fastqc twice. Fastqc is designed to both fastqcs, you don't have to call it twice.
[(1) ](https://carpentries-incubator.github.io/cwl-novice-tutorial/03-depen…
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From @jdblischak
I know you recommend using `r"""` to make the quoting more robust, but personally I find this more readable:
~~~
shell:
"""
fastqc -o . {input}
mv …
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Pros:
- speeds this step up a lot
- we can be sure that the machine they're using has multiple threads
Cons:
- one more thing for the user to think about
- different environments will have diff…
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Over the last week or so we've had multiple reports of people failing to download fastqc, these mostly seem to be from the states and are getting either extremely slow downloads, or downloads which te…
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Hi, I got the following error while trying to run the workflow using test data:
Traceback (most recent call last):
File "/usr/games/singularity", line 11, in
load_entry_point('Endgame-Sin…
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Which is the appropriate file to download and install for MacOS Monterey? I have been trying to install via command line but not successful.