-
Hi,
We have created singleR object without giving annotations txt file, can we add annotations for the cells to the singleR object without re-running the computationally intensive steps like fine.tu…
-
- [x] Methylation tab cBioPortal/cbioportal#7683
- [ ] Should we support continuous CNA data?
- [x] Support patient level enrichments analysis cBioPortal/cbioportal#4637
- [x] treat overlapping pa…
jjgao updated
6 months ago
-
[SCINA](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6678337/)
The tutorial can be found here: https://github.com/jcao89757/SCINA
-
It would be useful to be able to specify custom signature matrices.
Originally proposed by Sonja Hänzelmann via email and also mentioned as one of the "masked options" by @jracle85 in #14.
Pro…
-
Hi, nice work.
I'm trying to use your tool but I don't understand the difference between feature.list and compare.list. Could you explain it?
Additionally, I have seen that you have another ver…
-
Hello,
I noticed that the description of result downloaded from your website mentioned that the z score is T cell dysfunction score. The calculation method of dysfunction score and exclusion score…
-
Hello,
We are currently trying to run Anchorwave on the huge Axolotl genome (32 Gbp) and we are getting the following error:
Command:
```
anchorwave proali -t 19 -i GCF_000001405.39_GRCh38.p13…
-
Hi,
Thank you very much for the wonderful tool. I would like to create module lists for iRegulon analysis. However, I'm getting an error message during the module pick-up step. Could you please hel…
-
> singler = CreateSinglerSeuratObject(counts, annot = ann, "pbmc", min.genes = 0,
+ species = "Human", citation = "",
+ ref.list = list(), normalize.gene.length = F, variable.genes = "de",
+ …
-
Hello,
can you please tell me how did you create gene-set.txt file in your tutorial? Which software did you use and what is teh format of that file?
Thanks
Ana