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### Description of bug
Hello,
I have had a great experience using SPAdes for assembly _de novo_ transcriptomes,
Unfortunately, I have trouble running rnaSPAdes now,
It finished abnormally b…
RJEGR updated
2 months ago
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Hello,
I am trying to use megahit as part of a larger analysis pipeline, and have encountered a strange behavior. I produced a test set using the following steps:
1. Extracted a 1M genomic sequence …
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Just an idea. It would be nice if scaffolds/contigs could be annotated by if they are connected or not in the assembly graph.
If the assembler outputs a .gfa, [gfatools](https://github.com/lh3/gf…
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Hi!
I'm just wondering if there is a manual, documentation, or a rule of thumb that can help us in setting the configurations when using PECAT. Recently, we used PECAT to correct ONT reads of a ba…
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Hi Trans-abyss team,
I have a large dataset consisting of 99 libraries of ~35m reads each for a species that does not yet have a reference genome available and am interested in building a _de _novo…
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**Description:**
Click to expand for Sample of processing error
```
Successfully created the directory
/TELR/intermediate_files/vcf_ins_repeatmask
RepeatMasker version open-4.0.7
Searc…
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Dear RAPT developers,
The documentation explicitly says that RAPT handles bacterial or archaeal reads, but I wonder whether fungi reads (even being from eukaryotic) can be processed also. Thank yout …
mglgc updated
3 years ago
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Main citation:
```latex
@Article{Bankevich:12,
author = {Bankevich, Anton and Nurk, Sergey and Antipov, Dmitry and Gurevich, Alexey A and Dvorkin, Mikhail and Kulikov, Alexander S and Lesin, Val…
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Hi, brianjohnhaas.
I found a small problem when using PASApipeline v2.5.2 (or PASApipeline v2.5.3) via singularity to update my genome annotation.
The log remained me that **fasta** and **pasa binar…
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Hi I am using masurca (v3.2.6) assembler for assembly of plat with 1Gbp genome and I can observer quite high memory usage in command assembly.sh in line:
`create_k_unitigs_large_k -c $(($KMER-1)) -…