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Main citation:
```latex
@Article{Bankevich:12,
author = {Bankevich, Anton and Nurk, Sergey and Antipov, Dmitry and Gurevich, Alexey A and Dvorkin, Mikhail and Kulikov, Alexander S and Lesin, Val…
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Job number: 51c1d012-c8ef-4976-ae46-7ab1286c06d1
I submitted a "full spades" assembly with the following P3 command:
p3-submit-genome-assembly --recipe full_spades --srr-id SRR1635127
/jdassem…
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Hi,
I am trying to run Bayesembler on a tophat2 (2.0.8) generated file from human K562 whole cell polya+
RNAseq (dUTP protocol):
https://www.encodeproject.org/files/ENCFF412EYU/@@download/ENCFF412EYU…
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Hi, we have noted that assemblies generated with Flye very frequently introduce variants that are not supported by the reads, particularly at highly repetitive regions (but also in others as well). On…
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hello，I am trying to use this software to assemble the chloroplast genome, and the result shows INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE. I want to know where mistake happened, DoIyou have any s…
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Hello, thanks a lot for the great assembler.
I used hifiasm to assmbly three different heterozygous insect genomes using the option "-l 3". For the most heterozygous species I got a big circular sc…
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Hi,
I'm trying to do a binning with metabat2 using the following config.yaml:
# ------ Samples ------
samples: '*' # specify a list samples to use or '*' to use all samples
# ------ Resources …
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One thing thet really called my attention was the lack or chloroplast/mitochondrial assembly tools in Galaxy. Recently, Novoplasty was included, but I feel others could be added.
I would recommend:…
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I am paired end assembling a known genome - Salmonella enterica strain LT2 (CP014051.2) ~4.9M in size
I am assembling at 20x,50x,100x,300x and 600x coverage.
The results I am getting are strange…
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Hello,
I am trying to use NOVOPlasty to assemble an hexapod mitogenome from 150 bp paired reads. Contig is fine until a point where a 79bp sequence is indefinitely repeated at the end of the contig…