-
Congrats, you have developed a pretty nice tool! I'm testing it with beast analysis using time stamped viral genomes. I was trying to set the tree scale axis to year and months like I do in Figtree ad…
-
Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…
-
This is a list of repositories for sourmash, software for rapidly searching and analyzing genomes and metagenomes!
The main repository - [sourmash-bio/sourmash](https://github.com/sourmash-bio/sour…
-
Hi Toshiyuki,
Congrats on developing this tool! I have a question on potential application of this gene cluster analysis:
I have RenSeq contigs and gene models. I would like to map them to a re…
-
The zoom in and out buttons in the control panel primarily work on the left subpanel. To recreate:
1. Go to https://proteinpaint.stjude.org/?appcard=hic and click on the 2 chr example.
2. Click on…
-
**Describe the bug**
Our genome size is ~4Gb and the scale factor is 2. When I load the .hic file, the default scale factor is set to 3. Next, I imported the .assemlby file and set the scale factor t…
-
Is there a way to use this with custom genomes that are acquired de novo?
Also, would it be possible to support [sylph](https://github.com/bluenote-1577/sylph) or [skani](https://github.com/blueno…
-
I tried to run with two fly genomes, and after two days this software had not produced results. I am not sure how this program scales with genome size (or SNP density??). The multiple threads switch…
-
I want to sketch a genome to get 7-mers of amino-acids (ie peptides), so I give the new CLI a spin:
```bash
sourmash sketch translate -p k=7,k=10,scaled=1000,dayhoff genome.fasta
```
However, …
-
Hi,
I have been using minimap2 for many genome to genome alignments and I have noticed an odd pattern.
If I take a large genome like a human genome and align (paf output) the whole chromosomes …