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I ran through the [vignette](https://caleblareau.github.io/gchromVAR/articles/gchromVAR_vignette.html) using my scATAC-seq data for the peaks, and I downloaded a fine-mapped posterior-probabilities fo…
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Hello,
I'd like to ask for help regarding the run of 'macsyfinder --db-type ordered_replicon --sequence-db myfile.fasta --models CasFinder all'.
I'm having trouble for my data to get past the '…
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Hi,
I have a memory consumption problem with `rtracklayer::export.bw` function.
I have a RleList object of size ~320 MB, which I obtained by running `GenomicAlignments::coverage` function on a…
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## User Story
>As a website user
>I want to view and interact with various genome related figures associated to a dataset
>So that I get more perspectives on the data
## Acceptance Criteria
…
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The use case described in #57 will be used to identify requirements on the interfaces between the VP[^1] and the connected resources, on the data objects that are communicated, and the services that p…
mroos updated
4 months ago
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Hi Mike,
I am running Genomescope to get an estimate of genome size using paired-end HiC data. The expectation is that error profile is broader because HiC can capture ligation junction which is supp…
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Hi Thibaut,
I am trying to use snapclust for hybrids identification in a diploid plant pathogenic fungs.
I have genome-wide variants data of 110 individuals in a multi-sample vcf file.
I read th…
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Why do we need to execute 'convert mouse gene identifiers to human ones that match data in GWAS summary data'? I don't quite understand. Are GWAS sources different from single-cell data sources?
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Hi, we want to use ```tandem-genotypes``` to detect tandem repeats in genome-wide data. Following your instructions, I must first align my sequence using last before running ```tandem-genotypes```. U…
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Human - [1000 genomes data](https://www.internationalgenome.org/) might not be the best currently available. Or [gnomAD](https://gnomad.broadinstitute.org/downloads), which has hella more genomes. It'…