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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux 8.9
### Workflow Version
v2.2.0
### Workflow Execution
Command line (Cluster)
### Other workflo…
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## Description
It is currently not possible to filter for cancelled samples in StatusDB. This means that cancelled samples still show up as existing samples in the order portal and therefore the cu…
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I work in genomics and I have over-dispersed count data on a massive scale. With 1M total samples of ~1K observations from ~1K individuals, fitting a negative binomial mixed model with `glmer.nb()` f…
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Hi! I have started working with RepeatModeler and I have run into this problem.
When trying to execute this command:
`RepeatModeler -database Amazona_guildingii -threads 20 -LTRStruct >& run.o…
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https://github.com/alexdobin/STAR/blob/master/RELEASEnotes.md
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back u…
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Hi,
Thank a lot for this tools.
I have some 10x genomics scRNA-seq 3'data. So I have one bam file per sample , with barcoded reads represented each cell. I was wondering if I can use this tools…
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_037126465.1
…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back …
-
### Description of the bug
I encountered an error when running the command :
"Automatic clone_threshold is 'NA'. Consider setting --clonal_threshold manually."
After setting the --clonal_threshold …