czbiohub-sf rnaseq issues

czbiohub-sf / rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

http://nf-co.re

MIT License

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issues

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Start writing STAR Solo

#22 olgabot opened 5 years ago
0
Add velocyto

#21 olgabot opened 5 years ago
0
Update documentation

#20 olgabot opened 5 years ago
1
Update documentation with what works/doesn't work

#19 olgabot opened 5 years ago
0
Fix transcriptome-based quantification with Salmon

#18 olgabot opened 5 years ago
0
Add CZ Biohub name and logo to pipeline

#17 olgabot closed 5 years ago
1
Make reference genomes composable

#16 olgabot opened 5 years ago
1
Add biohub configuration

#15 olgabot closed 5 years ago
1
Add remaining htseq stuff

#14 olgabot closed 5 years ago
0
Add GATK

#13 olgabot opened 5 years ago
0
Add bracer and tracer

#12 olgabot opened 5 years ago
0
Support gencode GTF files

#11 olgabot closed 5 years ago
1
[WIP] Add htseq-count

#10 olgabot closed 5 years ago
4
Add `sourmash compute` to make sketches and `sourmash compare` to quickly calculate similarity between samples

#9 olgabot opened 5 years ago
0
Use htseq-count instead of featurecounts

#8 olgabot closed 5 years ago
0
Support 10x Genomics/droplet-based single-cell RNA-seq data

#7 olgabot opened 5 years ago
1
Fix email sending

#6 olgabot opened 5 years ago
0
Add ability to compose multiple genomes

#5 olgabot opened 5 years ago
0
Add `czbiohub.config` with default genome locations

#4 olgabot closed 5 years ago
1
Use fastp for trimming instead of trimgalore

#3 olgabot closed 5 years ago
0
Add fastp, htseq, remove trimgalore

#2 olgabot closed 5 years ago
0
Olgabot/rename czbiohub

#1 olgabot closed 5 years ago
1