-
This is somewhere between a bug and a feature request, but posting in Issues so that hopefully users (and future devs) see it: due to its age, ArchR has fallen behind on some of the references data it…
-
How long is the script supposed to take? I ran it using the Jurassic Park example, and it took several minutes for 5 movies. I am now running against a list of 500 Hallmark movies and I am over 45mi…
-
As you may be aware, Ryan Hisner has identified several Omicron sequences that have unusually high transition:transversion ratios, spread along the entire genome. This is likely a hallmark of molnupir…
-
Hello,
I trained a custom model following your instructions (but with different genomes file and hallmark genes) and everything ran successfully. However, when I try to run virsorter with the new mod…
-
In Sep 2022 GSEA released a new Mouse MSigDB (v2022.1.Mm) list of genes.
This doesn't seem to be incorporated in the [`msigdbr`](https://github.com/igordot/msigdbr) package, which still uses ortholo…
-
Hello, Thanks for the impressive tools for provirus identification. I have two questions when running the tools:
1. Can this tool be applied to Eukaryota organisms? Like some Axenic/Authentic algae…
-
Hi I'm just wondering why there would be less contigs appearing in the final-viral-score file (9808) as opposed to 12113 in the final-viral-boundary file? Can I include with confidence that all seqnam…
-
There are a variety of reasons for which grouping phenotypes is tricky, but right now it rally needs some serious love. We just have rows and rows of phenotypes with no indication of:
- [ ] which are…
-
**1.** License Name: WWL License
**2.** Short identifier: wwl
**3.** License Author or steward: Unknown
**4.** Comments: This license was discovered during Fedora Linux license review in package wwl. …
-
Dear, developers
Hmm... I have the problem there are no such directories and command not found, I can't figure it out. I am using this script in a package with a full cenote-taker2 installation.
…