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I found a quite big difference in the duplication between Fastp and Fastqc. For all my ~40 SE RNAseq samples, the rate is around 10-30% lower in Fastp compared to Fastqc. Is there an explanation for t…
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Hi,
I'm currently working on benchmarking VCF files generated from HG002_data(test_run just one sample) for SV calling(Manta, lumpy, GRIDSS, nf-core/sarek) against a truth set. I aligned the BAM file…
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The sampling interface is a bit of a mess at the moment. The way users are asked to specify sample sizes is clunky and unnatural, demanding that they perform unusual calculations to avoid shooting the…
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Hi, I am trying to cluster some ONT cDNA data using RATTLE however I am getting the following error:
```
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc…
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https://github.com/dotnet/orleans/issues/850
> Noticed a trend that MessagesDeliveredAsync method is invoked before the complete method OnNextAsync (consumer), is this correct?
Translating as usual …
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I suspect this has probably been discussed before, but a search through the mail archive didn't turn up anything. Apologies if I missed it.
The National Institute for Japanese Language and Linguist…
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We need to convert keras.io examples to work with Keras 3.
This involves two stages:
## Stage 1: tf.keras backwards compatibility check
Keras 3 is intended as a drop-in replacement for tf.ker…
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Hi,
I would like to know whether the "Total interspersed repeats" percentage in the tbl output file is the sum of the "Retroelements", "DNA transposons", "Rolling-circles", and "Unclassified". When …
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Hi,
I am new to data analysis, we have been doing CnT for histone modifications and transcription factor. First I used the following alignment parameters:
`--local --very-sensitive-local --no-un…
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Using trivvy to scan this container presents the following vulnerabilities:
```
➜ /usr/local/bin/trivy dius/pact-broker
2021-02-08T13:19:29.110+1100 WARN You should avoid using the :latest tag a…