-
Hello, I have successfully completed the assembly, but now I want to evaluate the quality of the genome assembly. The software I want to use at present is Busco. But how do I convert this GFA format f…
-
# Functionalities and modules
## Mentioned in the pipeline proposal
[primaryQC_pipeline_proposal.pdf](https://github.com/NationalGenomicsInfrastructure/seqinspector/files/14651445/primaryQC_pipe…
-
Hi, thanks a lot for the very nice tool! I have a question about building the meryl dbs with the Nanopore Q20 reads. What do you think if I use the Nanopore Q20 reads (only reads QV>20) plus illumina …
-
Hi there,
Very nice tool you have here!! I'm working with a polyploid (4X) and was wondering if there is an easy way to change the x axis in the produced spectra plots. The view cuts off at 45 mul…
-
## Aim
We need a report to summarise output.
What should be in the report?
- Need versioning.
- We should have a way to highlight what's changed since the last report.
Can this all be in Mu…
-
Hello,
I have a very strange issue, with my merqury plot being fine, except from some samples, I share the log in attachment but I will post here the strange bits
[D5C3.merqury.plot.spectra-cn.l…
-
Hello!
I wanted to express my gratitude for developing such excellent software! I recently assembled diploid haplotypes using pacbio hifi data, ont ultra long data, and hic data. I ran separate mer…
-
Hello,
my plots are cropped too tightly for my taste, is there a hidden option with the conda install to increase the length of the x axis? for example see this:
![mercury plot hairsplitter_final…
-
Hi there,
I was trying to produce a Smugplot with `PloidyPlot` but I am getting the following error in my cluster:
```
Symmex: Cannot write to /tmp/.symx.U.0. Enough disk space?
PloidyPlot: S…
-
I am currently assembling a teleost genome and I was comparing using hifiasm alone as advocated by the developer vs hifiasm+purge_dups as recommended by the Vertebrate Genome Project. The comparison w…