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`MBG bioconda 1.0.16`
Hi,
- I am testing MBG on an organellar genome and noticed the results can change if you run the program multiple times. I couldn't find a seed parameter in the options to …
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I was wondering if it would be possible to add a function to BitFieldVec that would allow extract multiple elements and returning them in the underlying word type. My specific use-case is this (but I…
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Working on https://github.com/dib-lab/khmer/issues/998, using this command:
> ./setup.py nosetests --tests tests/test_scripts.py:test_load_graph_multithread
default args:
> args = ['-N', '4', '-x',…
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![1716898870793](https://github.com/marbl/merqury/assets/92558135/6994b2ea-8576-4402-8502-fd83774f72d6)
Hi,
What should the completeness in the picture be?
Furthermore, what is the meaning of "…
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a lot of our ancillary documentation and workflows (genome-grist and spacegraphcats) suggests doing k-mer trimming of metagenomes, e.g. with trim-low-abund.
but, for gather in particular, this is n…
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Dans la région de Tanaris, que se soit les pirates de Bat-le-désert ou des mers du sud, ou leur chef, aucun d'eux ne donne de réputation pour Gadgetzan lorsqu'on les tuent.
La seule manière que j'ai …
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I'd like to understand why kmc gives an empty output for several genomes.
The genome I downloaded and tried to analyze was [https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/067/135/GCF_001067135.1_…
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I've downloaded the .ggr file on my linux machine but could not open the downloaded file. The message reads: Could not open "run_mers.gingr1.ggr" Archive type not supported. I tried running it from th…
yseif updated
6 years ago
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Dear MMseqs2 team,
Can you please give some advice on how to proceed with clustering a large set of short k-mers, something between 7-mer and 9-mers? I tried playing around with linclust but it's…
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per https://github.com/sourmash-bio/sourmash/issues/1833#issuecomment-1033860432, it seems like we should investigate this and figure out if it works, and if so, how well.