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I'm working with metabarcoding of fungi associated with plant tissues. After processing the data through the DADA2 ITS Pipeline Workflow (1.8) I realized through the taxonomy table that there is a lar…
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**Submitting author:** @adrientaudiere (Adrien Taudiere)
**Repository:** https://github.com/adrientaudiere/MiscMetabar
**Branch with paper.md** (empty if default branch):
**Version:** v0.5
**Editor:*…
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If we want the pipeline to run on CEG, we need to iron out how to get a version of R on there that can run the Dada2QAQC script. if I remember correctly, it can't install the seqinr package bc the ve…
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I'm using DADA2 as part of a eDNA metabarcoding data pipeline, and I was hoping to automate choosing TruncLen (instead of visually choosing based on plotQualityProfile()). As you've said in multiple …
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Great idea as I always have troubles to find a standardized method for defining the trimming parameters in DADA2. However, when I try running figaro.py with my data (16S V3/V4, Illumina MiSeq demultip…
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### Description of feature
I have a LULU subworkflow that I can add to Ampliseq. The subworkflow uses blastn to create the matchlist for LULU, then uses LULU for post-clustering curation. The input f…
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Bactopia seemed to assemble and complete fine on my pair-end samples, but I'm having a little difficulty navigating the output files.
Until recently I've mainly wored worked with metabarcoding and me…
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Hi @benjjneb,
I am performing DNA metabarcoding of marine communities using COI as marker gene (313 bp amplicon). For taxonomy assignment, I am using a sequence reference database compiled by Arran…
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**change title of case study 'eDNA barcoding'**
The title of the case study 'eDNA barcoding' should be 'eDNA metabarcoding' since the case study refers to complex, multispecies samples proces…