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MMARINeDNA
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metabarcoding_QAQC_pipeline
Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization
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Preliminary analysis fails
#26
nvpatin
opened
9 months ago
6
Made Print Statements dependent on file output
#25
alexandriai168
opened
10 months ago
0
Changes to readme
#24
alexandriai168
closed
10 months ago
0
Various Issues in `dada2QAQC.R`
#23
invertdna
closed
11 months ago
3
Other users running the pipeline
#22
invertdna
opened
1 year ago
0
Request: documentation for metadata
#21
invertdna
opened
1 year ago
0
Request: symlinks
#20
invertdna
opened
1 year ago
0
Give example of run name
#19
invertdna
closed
1 year ago
1
`scripts` and `metadata` folders
#18
invertdna
closed
1 year ago
1
Update reference taxonomies
#17
avancise
opened
1 year ago
0
missing file `primer_test_phyloseq.Rdata`
#16
invertdna
closed
11 months ago
1
change dir -- double dot vs single dot
#15
invertdna
opened
1 year ago
0
Check for R dependencies
#14
invertdna
closed
10 months ago
1
Path errors: `scripts`
#13
invertdna
closed
11 months ago
3
Add small test dataset
#12
invertdna
opened
1 year ago
0
Make Cutadapt Script not dependent on file names
#11
alexandriai168
opened
1 year ago
0
Path dependency in Primer_test_prelim_report.qmd
#10
invertdna
opened
1 year ago
0
R package dependencies -- Primer_test_prelim_report.qmd
#9
invertdna
opened
1 year ago
0
R version on CEG Server
#8
alexandriai168
closed
11 months ago
4
Remove filter from FilterandTrim step in dada2
#7
avancise
closed
1 year ago
1
Make code non-interactive
#6
avancise
closed
1 year ago
0
Add Cutadapt Feature!
#5
alexandriai168
closed
1 year ago
2
Figure out the metadata!
#4
avancise
opened
1 year ago
1
Add hashing to dada2
#3
avancise
closed
1 year ago
1
Add metadata
#2
avancise
opened
1 year ago
0
Sedna version
#1
avancise
closed
1 year ago
1