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Dear dev team,
Thanks for putting together an expanded version of pathoscope! I wanted to ask whether it was possible to use a database other than refseq. I usually work on environmental microbiome…
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Hi !
how to process virus clustering? What tools are available?
thanks a lot !
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First, thanks for a great tool and a great resource.
We are annotating already inferred protein sequences from metagenome-assembled genomes. I notice that, [at least in 2021](https://github.com/ar…
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Hi thank you for your nice tool.
I've encountered problem while using ggcaller v1.3.4. (error log is below the description part )
I created conda environment and installed ggcaller following offic…
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Hi,
1. When i used contigs file, no result obtained.
2. But when a subset was made and used for analysis then following result obtained.
3. But No data in warnings folder.
Pls suggest.
Thanks
…
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@jmtsuji Is there any quick read-level way of detecting if there is a high likelihood of multiple genomes being present before assembly? If my employers commercialize this, there is a high probability…
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Hi developers!
Thanks for your contribution to the study field of viral ecology!
Recently, I used the PHAMB tool to identify viral bins from my bulk metagenomes, and I had some questions about the o…
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Hello,
I have installed automlst and I am trying to run it on some metagenome assembled genomes in the form of fasta files. All of these metagenomes are from different soil samples but the genomes t…
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Hi,
I work on two datasets generated separately : Metagenome assembled genomes for virus, and 16S for bacteria.
I would like to know if spieceasi can be applied to this kind of analyses with combine…
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Hi,
I've been trying to work out what output from coverm would be best for conducting differential abundance analysis of genomes between groups, but I have been struggling to get my head around it.…