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Hi,
I'm wondering if it's possible to use NanoMethViz to visualise RNA methylation data, e.g. using methylation probability output from m6Anet? Especially as ONT are now including m6A base-calling …
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Part of the processed results of the methylation data has been uploaded into this [folder](https://github.com/STAT540-UBC/team_Bloodies/tree/master/Data/DNA-meth/Results_Filtered_Regions). We filtered…
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Hello Devon!
I was wondering if you had plans to implement a per-fragment methylation tool for MethylDackel. The problem with the per-read methylation is it doesn't take into account information on…
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Hi,
I am interested in context specific methylation events and I am seeing some strange association between the predicted percentage of modification and the coverage at a given site. I followed the…
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### Description of feature
Already forked from methylseq (written in DSL1) and added the following:
1. additional methylation calling with cgmaptools and general statistics (plots and tables) us…
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Hi,
Can we use differential methylated region file (attached) as input for omicsintegrator ? I gave it a try but its writing one chromosome several times in the events_to_genes file (attached). Is…
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decreased histone H3-K4 trimethylation during vegetative growth
abolished histone H3-K4 trimethylation during mitosis
increased histone H3-K4 trimethylation during mitosis
abolished histone H…
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I just would like to advocate for either:
1) a prominent disclaimer stating that the default maximum depth used during methylation calling can create misleading methylation calls.
2) removing this …
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Hi,
Thanks for developing such a promising package !
I just started using it and I'm having an issue with the betaHMM function. When using methylation data other that those provided with the pac…
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It would be a great option to extend the current BED file highlighting functionality `--highlight_bed` to allow BED files to be displayed as separate tracks, as for example if you want to see CpG isla…