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fraenkel-lab
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OmicsIntegrator
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
http://fraenkel.mit.edu/omicsintegrator
BSD 2-Clause "Simplified" License
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Update README.md
#35
alexlenail
closed
5 years ago
0
DNA methylation input
#34
Akanksha2511
opened
5 years ago
1
Tracking dist/ subdirectory
#33
agitter
opened
5 years ago
3
git clone of repo fails
#32
sgosline
closed
5 years ago
2
FASTA input files for Garnet
#31
agitter
opened
5 years ago
13
Garnet regression errors
#30
agitter
opened
6 years ago
4
Set max networkx, numpy, and scipy versions
#29
agitter
closed
6 years ago
4
Incompatibility with NetworkX version 2
#28
gungorbudak
closed
6 years ago
1
[WIP] Add alpha parameter -- sketch
#27
alexlenail
closed
7 years ago
5
NaN prizes and edge weights
#26
agitter
opened
7 years ago
3
Garnet integration test
#25
agitter
closed
7 years ago
1
Speed improvements to Garnet map_peaks_to_genes.py script
#24
Mkebede
closed
7 years ago
25
Old versions of example data
#23
agitter
closed
7 years ago
2
building msgsteiner on Mac OS requires gcc
#22
koksal
closed
7 years ago
3
Compressed files
#21
agitter
opened
7 years ago
1
Garnet output
#20
agitter
closed
7 years ago
0
Update msgsteiner
#19
agitter
closed
7 years ago
1
Test depth
#18
aabaker99
closed
7 years ago
2
msgsteiner directed edges
#17
agitter
closed
7 years ago
2
Directed edges bug
#16
aabaker99
closed
7 years ago
2
Adding [regression] section for saving regression plots
#15
nafisahis
closed
8 years ago
3
Travis ci
#14
aabaker99
closed
8 years ago
0
Forest unit tests
#13
agitter
closed
8 years ago
0
added advice for compiling msgsteiner
#12
aabaker99
closed
8 years ago
0
Switch OmicsIntegrator from CC BY-NC to an open source license
#11
dhimmel
closed
8 years ago
4
Create installable package for PyPI
#10
agitter
closed
7 years ago
2
Integration test
#9
agitter
closed
8 years ago
0
Forest reproducibility with seed
#8
agitter
closed
8 years ago
2
Updated example scripts
#7
agitter
closed
8 years ago
0
README and network updates
#6
agitter
closed
8 years ago
0
Garnet motif gif indices
#5
agitter
closed
7 years ago
3
Switch to PyTest test framework, add forest.score() unit test, fix score() bug
#4
agitter
closed
8 years ago
3
Update error message and dir creation in tgfb test script
#3
agitter
closed
9 years ago
0
Parsing problems in FOREST_INPUT.xls file from Garnet
#2
agitter
closed
9 years ago
2
In need of test framework
#1
sgosline
closed
7 years ago
7