-
When Kaiaulu started being written, `parser_*` functions tried to preserve the original tool column names, so it was easier for someone wanting to know more about the columns to just see the tools doc…
-
**Describe the bug**
When the program runs to the prune2df step, it will report an error: ArrowInvalid: Not a feather file. I read your previous discussion and thought it was a problem with the integ…
-
Hi,
So far I have been using the default database that comes bundled with Gimmemotifs, which is quite alright for most purposes. However, Jaspar 2018 has just been released and I wanted to repeat s…
-
No matter what pvalue threshold I used, there is alway something like
max score 21.001458097758977
min score -32.4614861955561
score cutoff -5.448056797732024
TOTAL 0 matches
-
Hi, I wanted to ask some questions about the motif-based outlier analysis.
I have a cohort of 40 individuals (WGS), and I suspect that one of them may have am increased burden of repeat expansions …
-
10/27/21
1. can we use variant-containing sequences as test data?
2. profile vs counts information?
answer: probability output, total counts, if multiple two then come up with per base counts, as…
-
Hi I am getting the following error while running the market_basket function.
```
>>> C.TFBS_from_motifs(regions="./Peaks_hg19.bed", ````
motifs="./HOCOMOCOv11_HUMAN_motifs.txt",genome="./hg19.fa…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rhielab/TENET
Confirm the following by editing ea…
-
Hi, I downloaded the 'pathogenic_repeats.hg38.bed' file from (https://github.com/PacificBiosciences/trgt/blob/main/repeats/pathogenic_repeats.hg38.bed).
As all my aligned files were previously align…
-
Hi @ALL,
i wish to build the Gallus gallus on my own, but i can really understand the input file, like below picture:
![image](https://user-images.githubusercontent.com/41668708/114869797-fec3…