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**- Describe the issue or question:**
Hello,
I'm attempting to use the new diaTracer function in Fragpipe with diaPASEF data for no-enzyme peptidomics. Attaching the log file here. diaTracer seemed …
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Hello,
I have been trying to construct a pipeline making use of msconvert in a Singularity image. I have tried the images from `proteowizard/pwiz-skyline-i-agree-to-the-vendor-licenses` and `chambm…
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We have three places in PAML where we currently need to represent N-dimensional array-structured information:
- The `contents` property of `SampleArray` is an array of URIs to SBOL `Component` obje…
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MZmine v3.9 takes too long to start on my institution server and oftentimes it doesn't even start.
Windows specifications:
Edition: Windows Server 2022 Standard
Version: 21H2
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Hello Michael,
I've been experimenting with running sage using a rust API built on tower/tokio/axum. I am in a good place with a fork, but to get things semi-working, I had to move some code aroun…
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Hello, I was really glad to see the DIA features incorporated in FragPipe.
Our laboratory uses MMTS rather than iodoacetamide to alkylate Cys side chains. (https://www.unimod.org/modifications_vie…
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### Basic information
* My operating system: Red Hat Enterprise Linux Server release 7.9 (Maipo)
* My MZmine version: 3.0.21 Beta
### What happened
Mouse clicks on the menu options in the GUI…
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This issue is intended to discuss and collect how we can transition to the novel ID data structure.
Eventually, we will have some replacement for the quant. data structures as well but it is unrealis…
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Hi,
I'm trying to run ms2rescore on a results.sage.tsv (or a results.sage.pin) output file which should be readable according to the documentation, yet I obtain this error:
`ms2rescore results.sa…
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Hi, is it possible to add support for the ion quantification as exported by [i2MassChroQ](http://pappso.inrae.fr/bioinfo/i2masschroq/) ?
I've run i2MassChroQ on the supplied dataset (6 files, 2 con…