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Enable support in NMDC edge to push metadata to Submission Portal.
We should be able to use ORCID JWT in bearer token to authenticate but we may need to coordinate with @pkalita-lbl and @naglepuff…
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@sujaypatil96 and I would like to write a data-driven (possibly even hypothesis testing) paper about data that can be accessed from NMDC, in comparison with data accessed from other interfaces.
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Apologies if this is partially overlapping with #328.
Currently we run the data portal ingest (1) automatically via a Rancher CronJob (daily on dev, weekly on prod) and (2) by manually triggering t…
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When a submitter press "submit" on the submission portal, we need to be able to contact the submitter.
Currently, there is no field for entering the submitter's email.
There's a related issue
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Replace nmdc-edge jgi_assembly.wdl with the one from the NMDC repo. Update metagenome_pipeline_wdl.tmpl to import new WDL and make changes necessary to work with the other WDLs
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later: retrieve from tunneled connection to MongoDB
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Update the faceted search `function` section to include Pfam and COG.
depends on #1333, #1337 and https://github.com/microbiomedata/nmdc-aggregator/issues/12
related to FY25 Q1 milestone https:/…
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note: planned "full freeze" of `main` branch on 2024-09-18, after which the goal is to merge `berkeley` into `main`.
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This is a "meta issue" that represents the overall task of updating the…
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Data portal search should support search by NMDC identifier (slot `id`) for the Database Class slots where the Range is a Class which contains `id` as a required slot
slots:
- data_object_se…
aclum updated
1 month ago
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We can generate a prefix map for all the NMDC schema prefixes currently supported with their expansions using this linkml command:
`poetry run gen-prefix-map src/schema/nmdc.yaml`
per @aclum's…