-
I've not seen this issue on your repository. Do you know why this would come about?
```
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Ru…
-
I download all ftp files from article"Test Illumina+Pacbio data set for MaSuRCA" in"MaSuRCA genome assembly package" website. After run the assemble.sh I got these error
[rom1025tyc@clogin4 yeast]$…
-
Hi,
I'm trying to run bam2gam for my own dataset with the following command:
`singularity exec --pwd /home/xxt050/opt/MoMI-G/scripts docker://momigteam/momig-tools:autobuild bash -x bam2gam.sh /ho…
-
Hi!
I am running ISEScan on a large set of genome assemblies (consisting primarily of assemblies from Illumina data and a couple PacBio genome assemblies). The tools runs great on the test data and m…
-
# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
-
This code
```console
nextflow run fmalmeida/ngs-preprocess -r dev -latest -profile docker --sra_ids "./input/sra_ids.txt" --output illumina_single --shortreads_type "single" --fastp_addit…
-
Is it expected to have some neighboring additional nodes in the subgraph?
```
vg find -G sim-pacbio-reads.1.gam -x SK1+Y12.bwa_X.chrI.xg > sim-pacbio-reads.1.subgraph.vg
vg view -d sim-pacbio-reads…
-
I'm having similar problems to an issue from 2017 (duplicate isoforms in chain_samples.py output), where I'm seeing duplicate isoforms in the output of chain_samples.py, however the isoforms are all m…
-
Dear developers,
I installed Strainline (and also Daccord) following the instruction in the README. As a test I ran Strainline on the example data from this repository however I encountered the fo…
-
Hi, Is there any way to do this? This would be simpler than converting PacBio BAM files to fastq, and then somehow integrating the info from the original PacBio BAM file with the mapped BAM file.
A…
gevro updated
4 years ago