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## Collection types and names:
- Lablab/purpureus/genomes/Highworth.gnm1.8K16
- Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B
- [x] Add collection(s) to the Data Store
- [x] Validate t…
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## The need
To annotate pan-genome genes, the user is encouraged to export from an existing pan-genome database via `anvi-get-sequences-for-gene-calls -g` and then annotate the genes via their own …
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Hi,
How should I construct the 'LQ_samples_info_map_to_pan.tsv' if I only have the assembled sample genome, but no annotations or ENA? Can I use the full pathway of the sample genome instead of the '…
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I want to know how to remove redundant genes from pan-genome, I analyzed 100 genomes by roary software and got pan_genome_reference.fa file which contains all core and auxiliary genes, I then use cd-h…
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**1. What were you trying to do?**
```alignment short-reads to pan-genome```
**2. What did you want to happen?**
```process stop for some sample, but sucesses on other. i was used cactus-pang…
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Hi
I'm attempting to process plant pan-genome using the MC-PanGenie pipeline, and I'm wondering how to handle N bases in the genome. They arise from gap connections during assembly and are retaine…
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Hi Martin,
Hope all is well! I just noticed on my Mac setup that versions v0.9.8 and v0.9.10 reports the following and exists:
```
gecco run -o /Users/raufs/Coding_Projects/test_lsapan/test_pan…
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## Short description of the problem
I created a genomes storage consisting of ~2k genomes, and when I tried to run `anvi-pan-genome`, it exceeds my disk quota on the cluster and the job fails. It c…
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Hi, How to add new sample genomes and contigs to an existing pan-genome producted by PGGB, and whether it can be done directly using the Minigraph or GraphAligner tool. Any suggestions on how to do th…
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Hello Developers,
I've successfully built a pan-genome consisting of 12 genomes using MC without any problems. Thank you for your kind descriptions on GitHub.
Now, I'm planning to find more SVs …