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Hi, thanks for developing this powerful tool! I appreciate for its exceptional performance, but I encountered a specific issue while attempting to display structure (anvio's interactive stuck at still…
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### Version
1
### DataCap Applicant
neal
### Project ID
13
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### D…
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Hi,
I have a question regarding using parental HiFi instead of Illumina data for a trio-phased assembly (all experiments done with recent versions of hifiasm and yak).
When doing this, we observed f…
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**1. What were you trying to do?**
I would like to convert haplotype sampled GBZ graph to GFA, with GRCh38 path written as rGFA tags.
**2. What did you want to happen?**
Generate an GFA f…
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Hi Anvi'o developers,
I've been using the pangenomic workflow a lot, but (1) knowing the genomic context of the genes that are a part of each protein cluster and (2) having quick access to the func…
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Hi,
I was wondering if the RAW data used to train the ONT model on R10.4.1 chemistry is publicly available. The ones on the GIAB FTP server are all R9.4.1. If so, could you point me to where these fi…
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When running IdentifyOrthologs.py with the default settings, I get the following message in the output:
> Parsing matrix to identify orthologs...
A_aeriphila_YT10 not found in matrix. Check strain…
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Hello,
I have encountered a BrokenPipeError [Errno 32] near the end of "anvi-pan-genome". I have been using a docker version of ANVIO (pulled the latest version) on MacPro 2019 8-Core Intel Xeon W …
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## The need
This feature would add UI elements to the inspect page for the user to manually enter start/stop coordinates based on position within the parent contig and retrieve subsequent sequence …
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### Description of feature
As originally raised by @d4straub on [Slack](https://nfcore.slack.com/archives/CE6SDBX2A/p1684495819945059), a big issue in metagenomics/microbiome research is insufficie…