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From the list:
I found that if I index a 0 length compound dataset by field name, I get a numpy array with a dtype that is different than if it is a dataset with data.
Below, I'm in the python debug…
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I want to know whether the following ERROR/warning matters when I mutate amino acids in pyrosetta:
```
core.import_pose.import_pose: File '/data2/rjli/test_dataset/1amk/1amk_protein.pdb' automatic…
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Thank you for developing such a promising software for the scientific community.
I tried running Alphalink2 with several datasets, including the rpoa-rpoc dataset used in the bioRxiv manuscript but …
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Hi,
I am new in OpenMM Simulation, but I would like to run a simulation for representatives from PDBBind dataset.
I encountered a problem with the first complex I chose - 6G84.
I ran DockPrep usi…
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```
## VoteNet
(Pdb) DC18.nyu40id2class
{3: 0, 4: 1, 5: 2, 6: 3, 7: 4, 8: 5, 9: 6, 10: 7, 11: 8, 12: 9, 14: 10, 16: 11, 24: 12, 28: 13, 33: 14, 34: 15, 36: 16, 39: 17}
(Pdb) len(DC18.nyu40id2class…
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Hiya!
I'm looking for a (hopefully!) easy way to get the PDB codes for each of the examples in the `PDB_Jespersen` Epitope prediction dataset.
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Dear author,
Thank you very much for your great contribution to the community and I am very interested in your research! However, it is a great pity that when I reproduced your work, I found t…
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Hi, thank you very much for your work. Now I want to training openfold, and download the corresponding dataset(RODA dataset), and then use the following script for training.
`python3 train_openfold.p…
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Hi!
When using foldcomp compress on this file: https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/proteomics/pdb/1tim.pdb
it breaks into 4 parts: 1tim.pdbA_0.fcz, 1tim.pdbA_1.fcz…
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Hi @dauparas
Thanks for the good job done, I am already using ProteinMPNN and would like to train or finetune it on a custom dataset.
Are there some scripts on how to process PDB files into the f…