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Hi, Team,
Great work on the model, however, is it possible to directly use the docked DNA-Protein model as input for DeepPBS to run a mutagenesis scan? I have a biological background with little c…
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Dear Sir/Madams,
I wonder if biotitie could calculate the unit cell configuration(not bio assembly) of protein from a mmcif file with the space group, unit cell shape and asymmetry unit in mmcif fi…
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I'm trying to integrate ImGui.NET in my Unity project, but I can't get it running. I'm trying to set it up, but it just crashes inside cimgui and there's no useful stack trace to figure out why. It wo…
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## Expected Behavior
provide a demo input file for foldmason to test it.
## Current Behavior
have no a demo input file for foldmason to test it.
https://search.foldseek.com/foldmason had demo …
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## Expected Behavior
I was testing foldseek multimer search on these two structurally similar PDBs obtained from RCSB PDB (also tried PDB-redo). However, the results are not returned as the files a…
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I was testing the use of DeepFri on PDB files -- so I downloaded the PDB file for 3LZB from the PDB API
I get the following error:
Traceback (most recent call last):
File "predict.py", line 41, i…
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Now l'm running AF2 multimer with "run_alphafold.py" . Both MSAs' generation for two chains are success, as well as the template search for the first chain. BUT python report an error during that of t…
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```
Can local PBD files be used in peptideshaker?
```
Original issue reported on code.google.com by `d.d1...@gmail.com` on 1 Mar 2012 at 8:13
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When publishing libraries and executables, the process should include generated pdb files, either as part of the same or a new artifact.
### Expected Behavior
Generated pdb files…
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XCA should be doing the downloading of files from the PDB. Including extracting event maps, if they were uploaded.
This won't be hard, just needs working out a few arcane details of where to fin…