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```
Eric posted this message to the list. You need to read the attached pdf
containing images for it to make sense
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2) Our next challenge was how to encode the TPP probab…
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王老师您好,
我是初次接触到蛋白组学数据分析和处理,刚刚测试了您的流程,可以成功跑通,但是对分析产生的结果文件不是特别的解读准确。我自建了一个短肽的数据库(长度从10-100氨基酸),通过和蛋白质组样本比对,想找出数据库中哪些短肽在样本中出现。分析结果中的DBReducer.fasta文件就是这个问题的答案么?另外,其他结果文件应该如何解读,都保存着哪些结果内容?
谢谢您的解答。
…
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http://www.ncbi.nlm.nih.gov/pubmed/24200586
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@bgruening @CarlosHorro
Has anyone seen this issue in PeptideShaker before?
PeptideShaker Error: "An error occurred while loading the identification files."
Would be great if anyone associated…
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Hi I am trying to look at my identifications in peptide shaker, first issue is the searchGUI zip folder is not automatically creating a .psdb file despite ticking the box to do so, and I get the follo…
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Hello,
We use iRT peptides in almost all our sample preps as a quality control for both our chromatography and identifications.
It would be interesting for us to be able to include a couple of p…
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I have done some edits.
In addition, here are some comments:
1. Explain why counting during aggregation, if there's any reason.
2. Wouldn't a function to create the peptide identification matrix …
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This is mostly to make the terms more generic by decoupling MS methods from any specific molecule type and by decoupling mudpit from any specific chromatography and/or any specific MS/MS technology. P…
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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…
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In HDMSE fragments are associated with precursors based on similarity of rt and dt. So there is a question: why if we do 3D grid search which has these dimensions in it, we can still increase identifi…