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Pose a question about one of the following articles:
“[Human-level control through deep reinforcement learning](https://www.nature.com/articles/nature14236)” 2015. V. Mnih...D. Hassabis. Nature 51…
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i ran a prediction for the case where protein dimer recognize a 32bp dsDNA,but the prediction structure has met the double strand spliting far away from each other.This is not a normal phenomenon and …
Qmi3 updated
7 months ago
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Work to be done section:
-Multi-sequence compare tools from the broad institute.
IGV: https://software.broadinstitute.org/software/igv/download
Some good command line softwares you will inevit…
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https://doi.org/10.1101/168120 (http://www.biorxiv.org/content/early/2017/07/25/168120)
> Accurate annotation of protein functions is important for a profound understanding of molecular biology. A …
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I am currently facing an issue with predicting protein-peptide complexes. I have successfully installed AlphaFold3 locally and received the model parameters. While I am able to predict individual prot…
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When preprocessing primary structure sequences (i.e. list of residue name strings), it has been shown that representing proteins in higher dimensional embedding space increases model performance capab…
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We are benchmarking folding methods on predicting structures of proteins containing unnatural amino acids. We saw that you mentioned 'prediction for unnatural amino acids is coming soon' on Github, so…
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* PIGT version:
* Python version: 3.9
* Operating System: centos
### Description
Ran:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor …
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Would it be possible to add a flag that limits the number of sequences returned by Jackhmmer/Nhmmer/Phmmer/Hmmsearch?
When HMMER is used in the context of protein structure prediction, we usually c…
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- [ ] Datasets
- [ ] AlphaFold 3 PDB dataset
- [x] PDB mmCIF filtering script (`scripts/filter_pdb_mmcifs.py`)
- [x] Fix periodic residue count-chemical component coun…