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I would like to just replace any missing values with 0 when using the impute() function. Can this be done with the below code? The function reference page does not specify this.
```{r}
imputed_MLE…
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This may not be up to date as I'm using some of the synapse data generated last week but I'm just trying to get ahead of a few fixes.
- BeatAML mutations file has a column titled "mutations" instea…
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### Due date for Sprint 11 - May 16th.
### General
- [x] Improve installation instructions so that the annotator can be installed without issue on Amazon Linux 2023 - @dlin30 - 2024/05/08
### Prote…
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First, thank you for this package. I have been using it to look at proteomics in some experiments, in particular using the drc_4p_plot function after running the fit_drc_4p function ( replicate_comple…
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The proposal that came out of #1773 regarding curating extracellular matrix proteins from proteomics experiments is detailed below.
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**Submitting author:** @wkumler (William Kumler)
**Repository:** https://github.com/wkumler/squallms
**Branch with paper.md** (empty if default branch): manuscript
**Version:** 0.99.6
**Editor:** Pend…
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According to @irisdianauy report.
Many E-PROT experiments have nothing under the Supplementary Information tab. Doesn’t seem like by design, because when you do click on the Supplementary Information…
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In the Bulk staging environment(wp-p1m2-98) issue:
1. `click on any proteomics experiments ex: E-PROT-68.
2. Then choose the plots tab, then click on the plots tab.
3. Click on any plots for the view…
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Cluster of RAB40B and XLOC_I2_008134 have the opposite phenotypes of a cluster of PIK3R3 and INSYN1 - googled most connections and got nothing so it may be novel.
Emailed Scott Soderling Duke Dec 1 h…
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Currently an experiment can be linked to another using the factors XML file with the filed ``. Because we’ll be adding links to different types of experiment, rather than “View by...” we should change…