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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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Hello,
I'm not sure if this is necessarily a bug, but I was hoping to gain some clarity on why inf values would be returned for some RNA sequences. Note this is not the case if the sequence is conv…
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At some point we may want to make a more comprehensive list of barcoding genes and their synonyms (also for use in the sequence ID tool, etc.)
Starting here (with a bit of help from AI):
[edited…
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**Steps to Reproduce**
1. Switch to Macro mode -> Sequence mode
2. Add sequence letters and select any
3. Right-click on selected letters and choose 'Modify in RNA builder'
4. Press 'Esc' button
…
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Thanks for your great work! But when I run the code on the RNA modality, there seems a bug as the following:
![image](https://github.com/CHPGenetics/COMPOSITE/assets/143673887/cdc29e08-9eef-420f-9a00…
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I have RNA modbams with m6A (in DRACH motifs) and everything runs without error but wgmeth/differential methylation results are sort of confusing - are there going to be RNA-specific additions to meth…
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Are you planning to add support for additional RNA modifications (e.g.: 5-methylcytosine, N1-Methylpseudouridine, N7-methylguanosine, ...) ? If so do you have broad idea when?
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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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**Describe the issue:**
Hello, I am trying to run the deepvariant RNA model on HG005 data locally (not restricted to chr20 like the Github example) but the model keeps generating this error while run…
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https://github.com/Shelsiyou/shinkareva/blob/c107ed8f7c7584533aaffd20d18f87b990ce5fe0/dna_hw_ver2.py#L3-L5
Должен был принимать одну строку по ТЗ, также то что передается при создании объекта не со…