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Hi everyone
am trying to run my RNA raw data on subioplatform using macOS m2 chip but I successfully get my results from fast but when the hisat2 started it gives error please need help. I installed…
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https://hutchdatascience.org/Choosing_Genomics_Tools/single-cell-rna-seq.html has an error -- "Full length..." slide is duplicated
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Hi,
I am working with the spatial data presented in your developing human brain paper. I would like to map RNA-seq data against your spatial data using Cell2Location tool.
1. Is there a way to co…
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Dear authors,
I am running the scCDC (latest version), following your tutorial here https://htmlpreview.github.io/?https://github.com/ZJU-UoE-CCW-LAB/scCDC/blob/main/inst/doc/scCDC.html . I succeed…
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Hi there,
The tools `rna_star` and `rna_starsolo` use indices produced by the data manager `rna_star_index_builder_data_manager`.
Currently the last version of STAR is 2.7.10b and the earlier versio…
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I encountered an issure when I used this r package. No assay information could be found for ScoreJackStraw
Setting assay used for FindNeighbors.RNA.pca to RNA
No assay information could be found for…
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Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
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**1. What were you trying to do?**
I used `vg rna` to build a spliced pangenome and a pantranscriptome with a GFA file from PGGB and a gff3 file. Similarly, I used `vg autoindex` to build index f…
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When running check_fasta_gff on the long UTR gff and fasta I received the following error
```
(riboviz) [s1734289@node3a05(eddie) riboviz]$ python -m riboviz.tools.check_fasta_gff -f D-Sp_2018/o…
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I have 3 replicates of spatial RNA+ATAC multiomics data, can SpatialGlue integrate them together? Or I must cluster each slice individually?