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Encountered error:
**Error in build_sequence: local variable 'formatted_output_pdb' referenced before assignment**
```
Traceback (most recent call last):
File "../main_sequence.py", line 414…
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Related to #1776.
Protein ID: Q96BV4 (https://www.glygen.org/protein/Q96BV4)
redirects to [P99999-1](https://www.glygen.org/protein/P99999-1).
But the history section on this page does not h…
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My code:
```r
bamba_ret = bambu(
reads = bam_file,
annotations = gtf_file,
genome = fna_file,
quant = FALSE
)
```
The error:
```
Error in value[[3L]](cond): Input g…
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Hi there, I am trying to test utrrates tool on my data.
I used
`alleyoop rates`
OK, and it produced boxplot as expected. The code for your reference was:
```
#!/bin/bash
module load minicon…
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Encountered error:
**An error occurred during geometry generation: System.get_size() got an unexpected keyword argument 'system'**
`Colbuilder Error: Geometry generation failed: Geometry generat…
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xiSEARCH version 1.8.4.1.
xiFDR version 2.2.4.
After the xiSEARCH completes, reading the results into xiFDR produces the following error:
```
Exception in thread "AWT-EventQueue-0" java.lang.N…
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![image](https://github.com/spinal-cord-7t/coil-qc-code/assets/2482071/b25523d0-bd55-4b22-ba0d-e5a641db2f88)
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**Describe the bug**
@ivirshup reported that [cellxgene_census_builder//test_builder.py](https://github.com/chanzuckerberg/cellxgene-census/blob/main/tools/cellxgene_census_builder/tests/test_builder…
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Hi, I was using command `seqtk subseq uniprot_sprot.fasta name.txt > out.fa`
my name.txt looks like:
```
sp|Q9H2Y7|ZN106_HUMAN Zinc finger protein 106 OS=Homo sapiens OX=9606 GN=ZNF106 PE=1 SV=1
s…
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Pathway analysis become hard to interpret when we obtain a tons of differential pathways. In this scenario, grouping the pathways into different categories and showing the top n in each category may …