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Hello,
Could we please add the following TMT16 plex labels "TMT133N, TMT133C, TMT134N" to the PRIDE ontology section? We are trying to upload TMT-16plex files onto Proteome exchange and the SDRF file…
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In the PXD014525 project, the steps in the following figure are used. A raw file contains a mixed protein of Yeast and HELA. And in different raw files, there are different dilution ratios. How shoul…
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When we have proper data in the payload for the tabs on the experiment page the tabs should be appear on the page.
Currently none of the tab is appearing for `E-ANND-3` experiment given the following …
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Developers need to run tests locally and it would be nice to have documentation about how to run the tests in this repo during package development.
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To my understanding, a factor value column should have a corresponding characteristics column. However, when I run the parse_sdrf validate-sdrf command, despite having a factor value column which has …
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For the following check:
An array data node should be described by a protocol
Can you indicate the node i.e Scan Name, Array Data File Name so people know exactly what column to look at.
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Similarly to the lung/bronchus issue that I commented on earlier. I noticed the following UBERON terms are not connected in the way I thought they might be since the FANTOM5 ontology seems to contradi…
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### Description of the bug
Im processing a dataset using proteomicsLFQ and it fails when it found empty list of peptides in one of the idXMLs.
```
TOPPBase.cpp(1605): Value of string option 'kee…
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We need to build a tool to load all GEO GDS datasets (GDS datasets contain curated metadata) It should support incremental update.
Useful resources:
- http://www.ncbi.nlm.nih.gov/geo/info/geo_paccess…
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### Description of the bug
```
nf-core/quantms execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: 8.
The full error message was:
…