arrayexpress magetabcheck issues

arrayexpress / magetabcheck

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Bump junit from 4.11 to 4.13.1

#49 dependabot[bot] opened 3 years ago
0
Return multiple cell locations in results to multi cell check rules

#48 olgamelnichuk opened 10 years ago
0
Add ENA specific check: Scan node requires non empty Comment[FASTQ_URI] value

#47 olgamelnichuk closed 10 years ago
2
Add ArrayExpress specific check: Comment[ArrayExpressAccession] is required

#46 olgamelnichuk closed 10 years ago
2
Protocol node for sequencing expriments requires Performer attribute

#45 olgamelnichuk opened 10 years ago
0
core-checker: review class-based checks runs

#44 olgamelnichuk opened 11 years ago
0
efo cache directory (if cpecified) should be automatically created

#43 olgamelnichuk closed 11 years ago
1
Remove useless check

#42 olgamelnichuk closed 11 years ago
0
File location check doesn't work

#41 olgamelnichuk opened 11 years ago
1
magetabcheck configureation file required

#40 olgamelnichuk closed 11 years ago
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NPE if IDF and SDRF has no location set

#39 olgamelnichuk closed 11 years ago
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Add AE check: IDF must provide non empty Public Release Date value

#38 olgamelnichuk closed 11 years ago
1
Add AE check: IDF must provide non empty Comment[AEExperimentType] value

#37 olgamelnichuk closed 11 years ago
0
Add data file check: For Affymetrix files the chip type in the file must match that in the array design name, if available

#36 olgamelnichuk opened 11 years ago
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Add data file check: Affymetrix CHP file must be listed as Derived data

#35 olgamelnichuk opened 11 years ago
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Add data file check: For files with Comment[MD5] their actual MD5 sum must match that specified

#34 olgamelnichuk opened 11 years ago
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Add data file check: Only files in supported data formats should be accepted

#33 olgamelnichuk opened 11 years ago
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Add Data File Check: SDRF should refer to data files

#32 olgamelnichuk opened 11 years ago
0
Add SDRF-to-IDF ref check: IDF should not contain term source definitions that used in neither IDF nor SDRF

#31 olgamelnichuk opened 11 years ago
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Add SDRF-to-IDF ref check: IDF should not contain protocol parameters that are not used in SDRF

#30 olgamelnichuk opened 11 years ago
0
Add SDRF-to-IDF ref check: Protocol parameters used SDRF (Protocol >> Parameter Value >> Type) must be declared in IDF

#29 olgamelnichuk opened 11 years ago
0
Add SDRF-to-IDF ref check: IDF should not contain protocol definitions that are not used in SDRF

#28 olgamelnichuk closed 11 years ago
0
Add SDRF-to-IDF ref check: Protocols used in SDRF must be declared in IDF

#27 olgamelnichuk opened 11 years ago
2
Add SDRF-to-IDF ref check: IDF should not contain experimental factor definitions that are not used in SDRF

#26 olgamelnichuk opened 11 years ago
0
Add SDRF-to-IDF ref check: Factors used in SDRF must be declared in IDF

#25 olgamelnichuk opened 11 years ago
0
Staging POM validation issues

#24 olgamelnichuk closed 11 years ago
1
Missing Signature for maven staging release

#23 olgamelnichuk closed 11 years ago
1
Checking of combined MAGE-TAB files

#22 emma-ebi opened 11 years ago
0
Generate the list of implemented checks automatically

#21 olgamelnichuk closed 11 years ago
0
Array data node check

#20 emma-ebi opened 11 years ago
4
Experiment Date check

#19 emma-ebi closed 11 years ago
0
SDRF check AD04: a typo in title

#18 olgamelnichuk closed 11 years ago
1
Add check: Experiment description should be at least 50 characters long

#17 olgamelnichuk closed 11 years ago
0
Checker does not run on experiments with type 'transcription profiling by array'

#16 olgamelnichuk closed 11 years ago
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Without -Defo.cachedir option the CL checker throws and error

#15 olgamelnichuk closed 11 years ago
0
Add Labeled Extract Node Check: Number of unique labels in a experiment should not be greater than the number of channels

#14 olgamelnichuk closed 11 years ago
0
Add Array Data Matrix check: All data matrix values should be non empty

#13 olgamelnichuk opened 11 years ago
0
Add Array Data Matrix check: Values of columns 'value', 'Value', 'VALUE', 'Signal', 'signal', 'ratio' should be numeric

#12 olgamelnichuk opened 11 years ago
0
Add Array Data Matrix check: All node names (Source or Sample or Extract or Labeled Extract or Hybridization or Assay) that are mapped by a data matrix file must be within column names of the matrix

#11 olgamelnichuk opened 11 years ago
0
Add Assay Node Check: An assay node must be described by a 'sequencing' protocol

#10 olgamelnichuk closed 11 years ago
1
Add Assay Node check: 'Technology Type' value = 'array assay' then incoming 'Labeled Extract nodes must have distinct labels

#9 olgamelnichuk closed 11 years ago
0
Add Assay Node check: If 'Technology Type' value = 'array assay' then incoming nodes must be 'Labeled Extract' nodes only

#8 olgamelnichuk closed 11 years ago
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Add check: Values of a experimental factor must vary

#7 olgamelnichuk closed 11 years ago
0
Add Protocol Node Check: A protocol node should have non empty 'Performer' attribute value

#6 olgamelnichuk closed 11 years ago
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Add check: There probably should be a corresponding 'Factor Value' node for a variable characteristic

#5 olgamelnichuk opened 11 years ago
0
Add Extract Node Check: An extract node must be described by a 'construction library' protocol

#4 olgamelnichuk closed 11 years ago
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Add Source Node check: For a source node there is at least one sample node should exist

#3 olgamelnichuk opened 11 years ago
0
Add HTS Error Check: HTS experiments must not use any array designs

#2 olgamelnichuk closed 11 years ago
0
Support for "standard" protocols needed

#1 olgamelnichuk opened 11 years ago
0