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Dear dada2 enthusiasts,
I'm pretty new to dada2 so I would like to hear some opinions from those who are experts and use dada2 regularly about my issue analysis.
I have tried using filterAndTrim…
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Hello,
Running into some issues where the program seems to be accessing a web resource/database (?) for retrieving sequences. I'm running on my cluster where the job nodes do not have external netwo…
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The new documentation #552 contains also a revamped tutorial. However, some important sets of functionalities miss a tutorial:
- [ ] `tantan` application interface: `tutorial/application/tantan`
-…
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I am working on processing bacterial 16S rRNA sequences with DADA2. I would like to classify these sequences with the newest update of the RDP database (version 19), but I have yet to find it formatte…
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Homology search started at 2024-08-21 08:40:06.163220.
Settings:
Search method: diamond.
Self-alignment method: native.
Remote fetch enabled: no.
Reading input proteins...
Sulfurospirill…
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First, thanks so much for this fantastic tool
I was analyzing a collection of plasmids from pseudomonads, and came across predictions of relaxases that were unexpected, because I got a prediction w…
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Dear creator, when I was building the prediction model, the DIA-NN database search data imported and the raw file dismounted showed errors as shown in the following figure. The 'Modified.Sequence' fie…
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- [ ] pgloader --version
```
3.6.7~devel
```
it seems that pgloader is not executing `reset sequence` if there is a `CAST`
In the following load file if I remove the…
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Steps to re-create:
1. loaded a target list from my account which had one target with coords 0:0:0 0:0:0
2. changed coords to something non-zero
3. clicked accept (according to the manual, this s…
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**Summary:**
There is a bug in the `findTableNames` method of the `Schema` class in Yii2 that affects the retrieval of table names when a schema is specified. The current implementation does not corr…