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[Neuronal morphometry directly from bitmap images](https://www.nature.com/articles/nmeth.3125)
- Published: 29 September 2014
- Tiago A Ferreira, Arne V Blackman, Julia Oyrer, Sriram Jayabal, Andrew…
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I love your tool, it saves me weeks of work. But I have the same problem every time - if the stage is not meant to be used in a specially adapted room, and the device itself is facing the audience, th…
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Dear @AlbertPun and @dfriedma ,
These are more questions than issues, I hope it fits here.
-I was wondering how does the network behave in the presence of neuronal bodies present in the images,…
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![bitmoji](https://render.bitstrips.com/v2/cpanel/9821471-121153341_5-s1-v1.png?palette=1&width=246)
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## Description
skeletonize_3d produces a zero array at certain sizes/thickness of the structure in the volume.
## Way to reproduce
In this code I create a 3D volume and draw a simple straight lin…
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Dear Seung lab,
I have this weird issue. I have around 25k labels obtained through connected component labelling. After skeletonization using kimimaro with the following parameters, I can see in so…
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In issue #6899 already a todo list was reported (self assigned in the mean time to @MaelRL), though there a far more packages where todo lists are present.
I think that todo lists should not be pre…
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### Description:
On a black and white image, if i have 2 crossing fibre like contours (long, steady and thin), the funktion above creates junctions like
1) ">---
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The current skeletonisation procedure is quite rudimentary. (Gaussian filter -> local thresholding -> thinning.) One possible way to improve it is to use the Hessian filter and shape index to find "ri…
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To make a complete statistical analysis of the resulting data from the skeletonization code, we need to generate all the relevant statistics to text files.