-
Hi uniPort authors,
First, thanks your great work!
However, when I tried to run uniPort on the sample data provided by scvi-tools (`from scvi.data import smfish, cortex
`), there was error rep…
-
Hi,
Related to the previous issue, I am trying to build `segmentation_free_allen_smfish` notebook and met with the following error after executing `plot_molecules`
```
sub_lims = [((11000, 1300…
-
Hi there, may I know where I can find the smfish validation data and also the gut visium data? Thanks!
-
**Describe the bug**
deepblink is significant for us to deal with FISH images.
When I create a npz file to train model, I find it there is something different.
I wonder why the image_arry.min is n…
-
Hi, congratulations! I noticed in your paper, you said 'For differential gene expression analysis and pathway enrichment, the raw data was normalized to relative counts per cell in MATLAB R2019a by di…
-
Thank you for supplying FISH-quant v2, which was a fantastic tool to analyze smFISH data.
However, after checking the document of sim-FISH, I just found the function to generate coordinations for s…
-
Hi I just installed Big-FISH but I am a bit lost on how to use it. I created the virtual environment with conda, activated it, and installed Big-FISH. I recently performed RNAScope on two genes. I hav…
-
貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
-
See [schema reference](https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md#suspension_type).
1. `cellxgene-schema `MUST warn and fail if the corresponding assa…
-
Researchers need to be aware of which data are single-cell vs single-nucleus so that they can take special care to ensure proper integration.
Most contributors don't provide it automatically because …