issues
search
Teichlab
/
Pan_fetal_immune
Collection of scripts for analysis of pan fetal immune atlas
24
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Hardware requirements
#60
f6v
opened
1 year ago
0
smfish
#59
Chengwei94
closed
1 year ago
3
Incorporating data user feedback
#58
emdann
closed
2 years ago
0
Adding data / metadata pointers
#57
emdann
closed
2 years ago
1
Revision work and release
#56
emdann
closed
2 years ago
0
update spatial analysis
#55
emdann
closed
2 years ago
0
add scripts for mac analysis
#54
emdann
closed
2 years ago
0
PostQC integration
#53
emdann
closed
2 years ago
0
Improved QC and annotation checklist
#52
emdann
closed
2 years ago
1
added nb to update scvi integration
#51
emdann
closed
2 years ago
0
adding metadata
#50
emdann
closed
2 years ago
0
New spatial data
#49
emdann
closed
2 years ago
0
Sharing compressed data
#48
adamgayoso
opened
2 years ago
7
Deep cleaning
#47
emdann
closed
2 years ago
0
Code / data availability checklist
#46
emdann
closed
2 years ago
0
Working emma
#45
emdann
closed
2 years ago
0
Working emma
#44
emdann
closed
2 years ago
0
added ATO mapping results
#43
emdann
closed
2 years ago
0
updated spatial analysis
#42
emdann
closed
2 years ago
0
Misc
#41
emdann
closed
2 years ago
0
many things
#40
emdann
closed
2 years ago
0
Notes from first look at cell2location alphatesting
#39
emdann
closed
2 years ago
0
ISS panel exploration + misc
#38
emdann
closed
2 years ago
0
misc
#37
emdann
closed
2 years ago
0
saving progress on factor analysis + misc
#36
emdann
closed
2 years ago
0
added 20210810_annotation_dotplots.ipynb
#35
emdann
closed
2 years ago
0
updated myeloid/lymphoid adult integration and differential abudnance…
#34
emdann
closed
2 years ago
0
Visium QC + updated differential abundance analysis on myeloid cells
#33
emdann
closed
2 years ago
0
Updated annotation + panimmune mapping
#32
emdann
closed
2 years ago
0
Feedback from FCA annotation meeting 27/07/2021
#31
emdann
closed
2 years ago
0
updated nb to collapse annotations and marker genes
#30
emdann
closed
3 years ago
0
adding query
#29
emdann
closed
3 years ago
0
updated metadata plots
#28
emdann
closed
3 years ago
0
updated differential abundance analysis + annotation collapsing
#27
emdann
closed
3 years ago
0
Annotation hackathon
#26
emdann
closed
2 years ago
1
adding updated factor analysis
#25
emdann
closed
3 years ago
0
Monday meeting notes
#24
emdann
closed
2 years ago
3
adding ILC velocity analysis
#23
emdann
closed
3 years ago
0
adding milo analysis + ILC velocity analysis
#22
emdann
closed
3 years ago
0
updated data info
#21
emdann
closed
3 years ago
0
updated scVI embeddings
#20
emdann
closed
3 years ago
0
splitting from scVI output
#19
emdann
closed
3 years ago
0
adding data info to metadata
#18
emdann
closed
3 years ago
0
Major repo cleaning and reordering
#17
emdann
closed
3 years ago
0
All things DGE across organs
#16
emdann
closed
3 years ago
0
Added code for LMM DE testing + refactoring merging w cellbender outputs
#15
emdann
closed
3 years ago
0
Feedback from Immune group
#14
emdann
closed
2 years ago
0
Cleaning clustering scripts + nanostring panel
#13
emdann
closed
3 years ago
0
Unified script for splitting and clustering
#12
emdann
closed
3 years ago
0
housekeeping
#11
emdann
closed
3 years ago
0
Next