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Hi Marcel,
Some of the TENxVisiumData package miss the "spatial coordinates" bit of information because this was formerly stored in a file called `tissue_positions_list.csv` (see [here](https://www…
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Hello,
I am testing `SpotClean` on a few 10X Visium datasets and am running into an error on some. I have not tried debugging too extensively as I'm hoping to get more information from the communit…
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I am very grateful to the author for introducing the transcriptome analysis process based on the tidyverse system. I am currently learning the usage of the tidybulk package, but found the following er…
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Hello,
related to this issue #118:
unfortunately I keep getting a similar error. Once I call the magic function it sais "Calculating PCA" and then the R session crashes after a while.
```
> libr…
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Hello, can you provide the data for analysis in visium_human_dorsolateral_prefrontal_Cortex.r?
I can get the raw data, but I'm not sure what goes from the raw data to the data for your analysis.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SydneyBioX/wSIR
Confirm the following by editing …
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Is there scope to define a splitColData and splitRowData methods for the SingleCellExperiment class?
I am working with a rather large SingleCellExperiment object and I often find myself needing to …
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Hello,
I ran escape using the following code but encountered errors that I cannot resolve:
library(escape)
H
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Hi,
I'm running Spotclean on the provided test data of adult mouse brain following the vignette. However, the function spotclean() produces a Warning and then stops running:
data(mbrain_raw)
…
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I get the following error when I use setClass to define a class , with contains = SingleCellExperiment and when I specify a new attribute in "slot ="
Error in checkSlotAssignment(object, name, valu…