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Hi,
I'm trying to learn the workflow through the tutorial. unfortunately, the commands in the tutorials are wrong according to the program codes.
i followed this steps
# Download the database…
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When i run "hecatomb install", an snakemake error occurred. Do you have any ideas how to deal with it? Thanks a lot.
[2024:06:11 18:14:25] Copying system default config to hecatomb.out/hecatomb.con…
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Hi,
Thanks for the gtdb-taxdump. I´m working on Silva , is there any available tax dump ?
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Hi all,
I used the conda installed the alienomics_v0.3.2, but I can't download the third-party database. I used command line "micromamba run -n alienomics alienomics_v0.3.2 -dd -ddf BURT -ddl /home…
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Hi there,
I have MAGs is generated from my own samples and annotated using GTDB-Tk. They have been de-replicated leaving me with a unique set which are not genetically close to any reference genome…
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## Bug report
Hello,
I submitted a `Nextflow` workflow to our cluster (`SLURM` scheduler), but `Nextflow` did not terminate after all tasks were completed. It eventually timed out because of the …
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Hello
I am trying to download kraken2 database, but I got an error please help to solve this issue
Error message
base) nucleome@nucleome-mathavan:~/Downloads/apps/kraken/kraken2$ ./kraken-bu…
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when I build nr database ,the error:
```
$ kraken2-build --build --db ~/software/metadb
Creating sequence ID to taxonomy ID map (step 1)...
No preliminary seqid/taxid mapping files found, aborti…
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Hi,
I am trying to build the nt database.
I downloaded the library and I have in the library subdirectory the nt.gz
I downloaded the taxonomy and I have
0 Jan 12 17:34 accmap.dlflag
19M Jan 1…
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# Script
db="ncbi_nt/ncbi_nt"
kma -ipe A16_S5_3_F22_S139_R1_001.atria.fastq.gz A16_S5_3_F22_S139_R2_001.atria.fastq.gz -o A16_S5_3_F22_S139_out_kma -t_db $db -t 20 -1t1 -mem_mode -and -apm f
# …