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Hi,
I got the following error message when running abundance_estimates_to_matrix.pl. As far as I understand, it seems that I have 'NA' instead of '0' when a given transcript in absent in my table but…
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Copied over from SourceForge:
Add the ability with TMM to specified a regex like "\d{1,2}/\d{1,2}/\d+" for example, to describe a token.
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Hello! I have a follow-up query on the normalization question posed by @anncsun. Is converting data to logCPM, normalizing to TMM, and then standardizing required before running TALLSorts, or are thes…
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after running leafcutter on the STAR_output of xqtl_protocol_data, the output is:
```
hs3163@node74:/mnt/vast/hpc/csg/xqtl_workflow_testing/finalizing$ cat output/leaf_cutter/xqtl_protocol_data_ba…
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I followed the instruction and have 2 compilation errors:
1.
.../ListSample/shared/src/iosMain/kotlin/com/tmm/listsample/models/ViewModelFactory.kt: (64, 35): Type mismatch: inferred type is CVal…
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Hello,everyone.I want to compare replicates for each of your samples,and it require the file'counts.matrix',when I try to make it,there is an error
(Trinity) administrator@administrator-X11DAi-N:~/di…
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hi
when save file, its not save with type. ie .doc or .docx
maybe it should save with .tmm ?
spham updated
3 years ago
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Hi,
I tried executing abundance_estimates_to_matrix.pl as follows, and everything looks fine (or at least I can`t spot any error messages). But there are no matrix files anywhere on my system.
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Hi,
I plan to add an option to SAMseq (and probably samr) to pass a depth vector in order to use TMM, etc. calculations or 1 (aka no depth normalization).
@MikeJSeo Did you already carry this out?
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SamGG updated
7 months ago